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#gisaid

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Jeff Gilchrist<p><a href="https://mstdn.science/tags/Ontario" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Ontario</span></a>, Canada peeps or anyone have insight into why there was a sudden stop of uploading Ontario COVID <a href="https://mstdn.science/tags/genomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomic</span></a> sequence data to <a href="https://mstdn.science/tags/GISAID" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GISAID</span></a>? Last sequences dated Feb. 12, 2025 and nothing since. There was still 57-83 sequences a day being uploaded before that. </p><p>Now only a small # of sequences coming from NB &amp; Quebec and periodically a few from AB, BC, and NS for all of Canada. You can see the big drop in Canada sequences when ON stopped submitting so very difficult to track what is going on.🧵1/</p>
MEActNOW<p>👏🏼 Thanks to all the countries that are supporting <a href="https://mastodon.social/tags/SARSCoV2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SARSCoV2</span></a> testing &amp; rapidly submitting sequences to <a href="https://mastodon.social/tags/GISAID" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GISAID</span></a> </p><p>Top submitters <a href="https://mastodon.social/tags/Canada" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Canada</span></a> <a href="https://mastodon.social/tags/USA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>USA</span></a> <a href="https://mastodon.social/tags/Sweden" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Sweden</span></a> <a href="https://mastodon.social/tags/Australia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Australia</span></a> <a href="https://mastodon.social/tags/UK" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>UK</span></a> <a href="https://mastodon.social/tags/Netherlands" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Netherlands</span></a> <a href="https://mastodon.social/tags/France" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>France</span></a> <a href="https://mastodon.social/tags/Germany" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Germany</span></a> <a href="https://mastodon.social/tags/Denmark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Denmark</span></a> <a href="https://mastodon.social/tags/Italy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Italy</span></a> <a href="https://mastodon.social/tags/Chile" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Chile</span></a> <a href="https://mastodon.social/tags/Japan" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Japan</span></a> <a href="https://mastodon.social/tags/Spain" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Spain</span></a> <a href="https://mastodon.social/tags/Slovenia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Slovenia</span></a> <a href="https://mastodon.social/tags/China" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>China</span></a> <br><a href="https://mastodon.social/tags/Brazil" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Brazil</span></a> <a href="https://mastodon.social/tags/HongKong" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>HongKong</span></a> <a href="https://mastodon.social/tags/Ireland" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Ireland</span></a> </p><p>🙏🏼🇨🇦</p>
ETE<p>Notre <a href="https://mamot.fr/tags/pipeline" class="mention hashtag" rel="tag">#<span>pipeline</span></a> de <a href="https://mamot.fr/tags/phylodynamique" class="mention hashtag" rel="tag">#<span>phylodynamique</span></a> <a href="https://mamot.fr/tags/COV" class="mention hashtag" rel="tag">#<span>COV</span></a>-flow pour générer des scripts <a href="https://mamot.fr/tags/Beast" class="mention hashtag" rel="tag">#<span>Beast</span></a> à partir des données <a href="https://mamot.fr/tags/GISAID" class="mention hashtag" rel="tag">#<span>GISAID</span></a> de <a href="https://mamot.fr/tags/COVID19" class="mention hashtag" rel="tag">#<span>COVID19</span></a> est maintenant publiée dans <span class="h-card" translate="no"><a href="https://ecoevo.social/@PeerCommunityJournal" class="u-url mention">@<span>PeerCommunityJournal</span></a></span> suite à une recommandation par PCI Genomics.</p><p>Merci à Gonché Danesh pour son excellent travail !</p><p><a href="https://peercommunityjournal.org/articles/10.24072/pcjournal.333/" target="_blank" rel="nofollow noopener noreferrer" translate="no"><span class="invisible">https://</span><span class="ellipsis">peercommunityjournal.org/artic</span><span class="invisible">les/10.24072/pcjournal.333/</span></a></p>
ETE<p>La mise à jour des données issues des labos de séquençage par <a href="https://mamot.fr/tags/CovSpectrum" class="mention hashtag" rel="tag">#<span>CovSpectrum</span></a> à l&#39;aide des données <a href="https://mamot.fr/tags/gisaid" class="mention hashtag" rel="tag">#<span>gisaid</span></a> jusqu&#39;au 14 Nov confirme la percée du <a href="https://mamot.fr/tags/variant" class="mention hashtag" rel="tag">#<span>variant</span></a> BQ.1.1 en France.</p><p><a href="https://cov-spectrum.org/explore/France/AllSamples/from=2022-08-01&amp;to=2022-11-14/variants?nextcladePangoLineage=bq.1.1*&amp;" target="_blank" rel="nofollow noopener noreferrer" translate="no"><span class="invisible">https://</span><span class="ellipsis">cov-spectrum.org/explore/Franc</span><span class="invisible">e/AllSamples/from=2022-08-01&amp;to=2022-11-14/variants?nextcladePangoLineage=bq.1.1*&amp;</span></a></p>
ETE<p>Les données de séquençage <a href="https://mamot.fr/tags/COVID" class="mention hashtag" rel="tag">#<span>COVID</span></a> générées par les labos français sont maintenant sur <a href="https://mamot.fr/tags/GISAID" class="mention hashtag" rel="tag">#<span>GISAID</span></a> et analysées par nos collègues suisses de <a href="https://mamot.fr/tags/COVSPECTRUM" class="mention hashtag" rel="tag">#<span>COVSPECTRUM</span></a>.</p><p><a href="https://mamot.fr/tags/BQ1" class="mention hashtag" rel="tag">#<span>BQ1</span></a>.1 représentait près de la moitié des infections fin octobre.</p><p><a href="https://cov-spectrum.org/explore/France/AllSamples/Past3M/variants?nextcladePangoLineage=bq.1.1*&amp;" target="_blank" rel="nofollow noopener noreferrer" translate="no"><span class="invisible">https://</span><span class="ellipsis">cov-spectrum.org/explore/Franc</span><span class="invisible">e/AllSamples/Past3M/variants?nextcladePangoLineage=bq.1.1*&amp;</span></a></p>
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